##fileformat=VCFv4.2
##reference=file:///some/path/1000GenomesPilot-NCBI36.fasta
##FILTER=<ID=PASS,Description="All filters passed">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##contig=<ID=1,length=2147483647>
##contig=<ID=2,length=2147483647>
##contig=<ID=3,length=2147483647>
##contig=<ID=4,length=2147483647>
##contig=<ID=5,length=2147483647>
##contig=<ID=20,length=2147483647>
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	XY00001	XY00002
1	105	.	T	G,A	999	PASS	.	GT	1/2	1/2
2	1	.	G	ACGT	999	PASS	.	GT	1/0	1/0
2	101	.	C	A	999	PASS	.	GT	1/1	1/1
2	114	.	TC	TTCC,TTC	999	PASS	.	GT	1/2	1/2
2	115	.	T	C	999	PASS	.	GT	0/0	0/0
20	3	.	G	CT	999	PASS	.	GT	0/1	0/1
20	3	.	GATG	GACT	999	PASS	.	GT	1/0	1/0
20	5	.	TGGG	TAC,TG,TGGGG,AC	.	PASS	.	GT	1/2	1/2
20	59	.	AG	.	999	PASS	.	GT	0/0	0/0
20	80	.	CACAG	CACAT	999	PASS	.	GT	0/1	0/1
20	81	.	A	C	999	PASS	.	GT	0/1	0/1
20	95	.	TCACCG	ACACCG	999	PASS	.	GT	0/1	0/1
20	95	.	TCACCG	AAAAAA	999	PASS	.	GT	0/1	0/1
20	273	.	CAAAAAAAAAAAAAAAAAAAAA	CAAAAAAAAAAAAAAAAAAAAAAA,CAAAAAAAAAAAAAAAAAAAAAAAA	999	PASS	.	GT	1/2	1/2
20	274	.	AAAAAAAAA	AAAAAAAAAAAAAAAAAAA	999	PASS	.	GT	./.	./.
20	275	.	A	C,G	999	PASS	.	GT	2	2
20	278	.	AAAAAAAAAAAAAAAAA	AAAAAAAAAAAAAAAAAAA	999	PASS	.	GT	./.	./.
3	10	.	GTGGAC	GTGGACACAC,GTGGACAC,GTGGACACACAC,GTGG,GTGGACACACACAC,ATGGACACACAC	999	PASS	.	GT	./.	./.
3	15	.	CACA	CAC	999	PASS	.	GT	./.	./.
4	21	.	ATTTTTTTTTTTTTTTC	ATTTTTTTTTTTTTTC,ATTTTTTTTTTTTTTTT,ATTTTTTTTTTTTTTTTC	999	PASS	.	GT	./.	./.
5	22	.	A	AGA	999	PASS	.	GT	./.	./.
